Identification and expression analysis of the ZF-HD gene family in castor
[Objective] The ZF-HD family genes of castor were identified and analyzed by sequence analysis, phylogenetic analysis, promoter and expression pattern analysis, to provide a reference for further study of the function of ZF-HD genes in castor. [Methods] Based on the whole genome data of castor, Z...
Saved in:
| Main Authors: | , , , , , |
|---|---|
| Format: | Article |
| Language: | zho |
| Published: |
Science Press
2024-12-01
|
| Series: | Xibei zhiwu xuebao |
| Subjects: | |
| Online Access: | http://xbzwxb.alljournal.net/xbzwxb/article/abstract/20240312?st=article_issue |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
| _version_ | 1823860482184839168 |
|---|---|
| author | XU Xingyuan HUANG Fenglan ZHANG Chunlan ZHU Mengyang CUI Zhiyu LIU Peng |
| author_facet | XU Xingyuan HUANG Fenglan ZHANG Chunlan ZHU Mengyang CUI Zhiyu LIU Peng |
| author_sort | XU Xingyuan |
| collection | DOAJ |
| description | [Objective] The ZF-HD family genes of castor were identified and analyzed by sequence analysis,
phylogenetic analysis, promoter and expression pattern analysis, to provide a reference for further
study of the function of ZF-HD genes in castor. [Methods] Based on the whole genome data of castor,
ZF-HD genes were identified, and bioinformatics and expression analysis under abiotic stress were carried
out. [Results] A total of 13 ZF-HD genes were identified from castor, which were unevenly distributed on
Chr1-Chr10. All 13 RcZF-HD proteins were hydrophilic unstable proteins, and were localized in the nucleus.
The RcZF-HD genes were clustered into three subgroups, and the number of genes in each group was
different. The gene structure was conserved within the group but diversified between groups. RcZF-HD
genes had a large number of tissue-specific elements, stress response elements, and hormone response elements.
The ZF-HD genes were widely responsive to abiotic stresses and their expression was tissue-specific.
[Conclusion] A total of 13 ZF-HD genes were identified in castor. It is known that members of the
castor ZF-HD gene family play an important role in responding to abiotic stress, this research provides
theoretical basis for the study of castors stress resistance. |
| format | Article |
| id | doaj-art-2c2f5a9ccc8946d0948c2b758ded3f98 |
| institution | Kabale University |
| issn | 1000-4025 |
| language | zho |
| publishDate | 2024-12-01 |
| publisher | Science Press |
| record_format | Article |
| series | Xibei zhiwu xuebao |
| spelling | doaj-art-2c2f5a9ccc8946d0948c2b758ded3f982025-02-10T12:44:25ZzhoScience PressXibei zhiwu xuebao1000-40252024-12-0144121915192610.7606/j.issn.1000-4025.20240312Identification and expression analysis of the ZF-HD gene family in castorXU Xingyuan0HUANG Fenglan1ZHANG Chunlan2ZHU Mengyang3CUI Zhiyu4LIU Peng5College of Agriculture, Inner Mongolia Minzu University, Tongliao, Inner Mongolia 028000, ChinaCollege of Life Sciences and Food Engineering, Inner Mongolia Minzu University, Tongliao, Inner Mongolia 028000, China; Key Laboratory of Castor Breeding of the State Ethnic Affairs Commission, Tongliao, Inner Mongolia 028000, China; Inner Mongolia Industrial Engineering Research Center of Universities for Castor, Tongliao, Inner Mongolia 028000, China; Inner Mongolia Key Laboratory of Castor Breeding and Comprehensive Utilization, Tongliao, Inner Mongolia 028000, China; Castor Industry Technology Innovation Inner Mongolia Autonomous Region Engineering Research Center, Tongliao, Inner Mongolia 028000, ChinaCollege of Life Sciences and Food Engineering, Inner Mongolia Minzu University, Tongliao, Inner Mongolia 028000, ChinaCollege of Agriculture, Inner Mongolia Minzu University, Tongliao, Inner Mongolia 028000, ChinaCollege of Agriculture, Inner Mongolia Minzu University, Tongliao, Inner Mongolia 028000, ChinaCollege of Agriculture, Inner Mongolia Minzu University, Tongliao, Inner Mongolia 028000, China[Objective] The ZF-HD family genes of castor were identified and analyzed by sequence analysis, phylogenetic analysis, promoter and expression pattern analysis, to provide a reference for further study of the function of ZF-HD genes in castor. [Methods] Based on the whole genome data of castor, ZF-HD genes were identified, and bioinformatics and expression analysis under abiotic stress were carried out. [Results] A total of 13 ZF-HD genes were identified from castor, which were unevenly distributed on Chr1-Chr10. All 13 RcZF-HD proteins were hydrophilic unstable proteins, and were localized in the nucleus. The RcZF-HD genes were clustered into three subgroups, and the number of genes in each group was different. The gene structure was conserved within the group but diversified between groups. RcZF-HD genes had a large number of tissue-specific elements, stress response elements, and hormone response elements. The ZF-HD genes were widely responsive to abiotic stresses and their expression was tissue-specific. [Conclusion] A total of 13 ZF-HD genes were identified in castor. It is known that members of the castor ZF-HD gene family play an important role in responding to abiotic stress, this research provides theoretical basis for the study of castors stress resistance.http://xbzwxb.alljournal.net/xbzwxb/article/abstract/20240312?st=article_issuecastorrczf-hd gene familybioinformaticsabiotic stressexpression mode |
| spellingShingle | XU Xingyuan HUANG Fenglan ZHANG Chunlan ZHU Mengyang CUI Zhiyu LIU Peng Identification and expression analysis of the ZF-HD gene family in castor Xibei zhiwu xuebao castor rczf-hd gene family bioinformatics abiotic stress expression mode |
| title | Identification and expression analysis of the ZF-HD gene family in castor |
| title_full | Identification and expression analysis of the ZF-HD gene family in castor |
| title_fullStr | Identification and expression analysis of the ZF-HD gene family in castor |
| title_full_unstemmed | Identification and expression analysis of the ZF-HD gene family in castor |
| title_short | Identification and expression analysis of the ZF-HD gene family in castor |
| title_sort | identification and expression analysis of the zf hd gene family in castor |
| topic | castor rczf-hd gene family bioinformatics abiotic stress expression mode |
| url | http://xbzwxb.alljournal.net/xbzwxb/article/abstract/20240312?st=article_issue |
| work_keys_str_mv | AT xuxingyuan identificationandexpressionanalysisofthezfhdgenefamilyincastor AT huangfenglan identificationandexpressionanalysisofthezfhdgenefamilyincastor AT zhangchunlan identificationandexpressionanalysisofthezfhdgenefamilyincastor AT zhumengyang identificationandexpressionanalysisofthezfhdgenefamilyincastor AT cuizhiyu identificationandexpressionanalysisofthezfhdgenefamilyincastor AT liupeng identificationandexpressionanalysisofthezfhdgenefamilyincastor |