Development of tolerance to bedaquiline by overexpression of trypanosomal acetate: succinate CoA transferase in Mycobacterium smegmatis

Abstract The F-type ATP synthase inhibitor bedaquiline (BDQ) is a potent inhibitor of mycobacterial growth and this inhibition cannot be rescued by fermentable carbon sources that would supply ATP by an alternative pathway (substrate level phosphorylation). To gain mechanistic insight into this phen...

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Main Authors: Gloria Mavinga Bundutidi, Kota Mochizuki, Yuichi Matsuo, Mizuki Hayashishita, Takaya Sakura, Yuri Ando, Gregory Murray Cook, Acharjee Rajib, Frédéric Bringaud, Michael Boshart, Shinjiro Hamano, Masakazu Sekijima, Kenji Hirayama, Kiyoshi Kita, Daniel Ken Inaoka
Format: Article
Language:English
Published: Nature Portfolio 2025-02-01
Series:Communications Biology
Online Access:https://doi.org/10.1038/s42003-025-07611-0
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author Gloria Mavinga Bundutidi
Kota Mochizuki
Yuichi Matsuo
Mizuki Hayashishita
Takaya Sakura
Yuri Ando
Gregory Murray Cook
Acharjee Rajib
Frédéric Bringaud
Michael Boshart
Shinjiro Hamano
Masakazu Sekijima
Kenji Hirayama
Kiyoshi Kita
Daniel Ken Inaoka
author_facet Gloria Mavinga Bundutidi
Kota Mochizuki
Yuichi Matsuo
Mizuki Hayashishita
Takaya Sakura
Yuri Ando
Gregory Murray Cook
Acharjee Rajib
Frédéric Bringaud
Michael Boshart
Shinjiro Hamano
Masakazu Sekijima
Kenji Hirayama
Kiyoshi Kita
Daniel Ken Inaoka
author_sort Gloria Mavinga Bundutidi
collection DOAJ
description Abstract The F-type ATP synthase inhibitor bedaquiline (BDQ) is a potent inhibitor of mycobacterial growth and this inhibition cannot be rescued by fermentable carbon sources that would supply ATP by an alternative pathway (substrate level phosphorylation). To gain mechanistic insight into this phenomenon, we employed a metabolic engineering approach. We introduced into Mycobacterium smegmatis an alternative ATP production pathway by substrate-level phosphorylation, specifically through overexpression of trypanosomal acetate:succinate co-enzyme A (CoA) transferase (ASCT). Intriguingly, the overexpression of ASCT partially restored intracellular ATP levels and resulted in acquired tolerance to BDQ growth inhibition at low, but not high concentrations of BDQ. These results implicate intracellular ATP levels in modulating the growth inhibitory activity of BDQ at low concentrations. These findings shed light on the intricate interplay between BDQ and mycobacterial energy metabolism, while also providing a novel tool for the development of next-generation ATP synthase-specific inhibitors targeting mycobacteria.
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institution Kabale University
issn 2399-3642
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series Communications Biology
spelling doaj-art-8c3168de62004542845188ac64d264b62025-02-09T12:50:16ZengNature PortfolioCommunications Biology2399-36422025-02-018111110.1038/s42003-025-07611-0Development of tolerance to bedaquiline by overexpression of trypanosomal acetate: succinate CoA transferase in Mycobacterium smegmatisGloria Mavinga Bundutidi0Kota Mochizuki1Yuichi Matsuo2Mizuki Hayashishita3Takaya Sakura4Yuri Ando5Gregory Murray Cook6Acharjee Rajib7Frédéric Bringaud8Michael Boshart9Shinjiro Hamano10Masakazu Sekijima11Kenji Hirayama12Kiyoshi Kita13Daniel Ken Inaoka14Program for Nurturing Global Leaders in Tropical and Emerging Communicable Disease, Graduate School of Biomedical Sciences, Nagasaki UniversityDepartment of Immunogenetics, Institute of Tropical Medicine (NEKKEN), Nagasaki UniversitySchool of Tropical Medicine and Global Health, Nagasaki UniversitySchool of Tropical Medicine and Global Health, Nagasaki UniversityDepartment of Molecular Infection Dynamics, Institute of Tropical Medicine (NEKKEN), Nagasaki UniversityDepartment of Infectious Disease Control, Oita UniversityDepartment of Microbiology and Immunology, University of OtagoDepartment of Molecular Infection Dynamics, Institute of Tropical Medicine (NEKKEN), Nagasaki UniversityLaboratoire de Microbiologie Fondamentale et Pathogénicité (MFP), Université de BordeauxFakultät für Biologie, Genetik, Ludwig-Maximilians-Universität MünchenProgram for Nurturing Global Leaders in Tropical and Emerging Communicable Disease, Graduate School of Biomedical Sciences, Nagasaki UniversityDepartment of Computer Science, Institute of Science TokyoDepartment of Immunogenetics, Institute of Tropical Medicine (NEKKEN), Nagasaki UniversitySchool of Tropical Medicine and Global Health, Nagasaki UniversityDepartment of Molecular Infection Dynamics, Institute of Tropical Medicine (NEKKEN), Nagasaki UniversityAbstract The F-type ATP synthase inhibitor bedaquiline (BDQ) is a potent inhibitor of mycobacterial growth and this inhibition cannot be rescued by fermentable carbon sources that would supply ATP by an alternative pathway (substrate level phosphorylation). To gain mechanistic insight into this phenomenon, we employed a metabolic engineering approach. We introduced into Mycobacterium smegmatis an alternative ATP production pathway by substrate-level phosphorylation, specifically through overexpression of trypanosomal acetate:succinate co-enzyme A (CoA) transferase (ASCT). Intriguingly, the overexpression of ASCT partially restored intracellular ATP levels and resulted in acquired tolerance to BDQ growth inhibition at low, but not high concentrations of BDQ. These results implicate intracellular ATP levels in modulating the growth inhibitory activity of BDQ at low concentrations. These findings shed light on the intricate interplay between BDQ and mycobacterial energy metabolism, while also providing a novel tool for the development of next-generation ATP synthase-specific inhibitors targeting mycobacteria.https://doi.org/10.1038/s42003-025-07611-0
spellingShingle Gloria Mavinga Bundutidi
Kota Mochizuki
Yuichi Matsuo
Mizuki Hayashishita
Takaya Sakura
Yuri Ando
Gregory Murray Cook
Acharjee Rajib
Frédéric Bringaud
Michael Boshart
Shinjiro Hamano
Masakazu Sekijima
Kenji Hirayama
Kiyoshi Kita
Daniel Ken Inaoka
Development of tolerance to bedaquiline by overexpression of trypanosomal acetate: succinate CoA transferase in Mycobacterium smegmatis
Communications Biology
title Development of tolerance to bedaquiline by overexpression of trypanosomal acetate: succinate CoA transferase in Mycobacterium smegmatis
title_full Development of tolerance to bedaquiline by overexpression of trypanosomal acetate: succinate CoA transferase in Mycobacterium smegmatis
title_fullStr Development of tolerance to bedaquiline by overexpression of trypanosomal acetate: succinate CoA transferase in Mycobacterium smegmatis
title_full_unstemmed Development of tolerance to bedaquiline by overexpression of trypanosomal acetate: succinate CoA transferase in Mycobacterium smegmatis
title_short Development of tolerance to bedaquiline by overexpression of trypanosomal acetate: succinate CoA transferase in Mycobacterium smegmatis
title_sort development of tolerance to bedaquiline by overexpression of trypanosomal acetate succinate coa transferase in mycobacterium smegmatis
url https://doi.org/10.1038/s42003-025-07611-0
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